PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023923491.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 344aa MW: 37817.6 Da PI: 7.4751 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023923491.1 89 FKTKLCCKFRA-GTCPYVTNCNFAHS 113 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.2e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023923491.1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.2e-13 | 224 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023923491.1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence |
MDFSGGNVVQ VITGSGPENW SVNDNAMWAT EDDYRAWSNN NGDDTPSNSN YDQRQSQSRS 60 GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP 120 PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSANFVGDSQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA ASPVSGPNAK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGA AELHRYGGGL VEGETRDSSS APPDSKQGGV PSKTPADSVV VSVAPVPHSD 300 VYHMGVPSQR SSIVIQRPGQ RTHQKWKGPD KISRIYGDWI DDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-131 | C3H family protein |