PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023922524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30862.3 Da PI: 8.9211 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W ++Ed++l+++++ +G+g W+ +++ g++R++k+c++rw++yl XP_023922524.1 13 RGAWCAWEDDILKNYIEIHGKGKWTDLPQRAGLRRCGKSCRLRWLNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.3e-18 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG+ W++Iar+++ gRt++++k++w++ XP_023922524.1 66 RGNFSEDEEDLIIKLHKLLGNS-WSLIARRLP-GRTDNEIKNYWNTI 110 89******************99.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence |
MGRRPCCAKG VIRGAWCAWE DDILKNYIEI HGKGKWTDLP QRAGLRRCGK SCRLRWLNYL 60 RPDIKRGNFS EDEEDLIIKL HKLLGNSWSL IARRLPGRTD NEIKNYWNTI LSKRIKNLTS 120 DSNPRIKPVA HPVIRPKAMR CTKVILPWQP NNNQIFFNEN IVPYGNRENL FPLVQQGNNI 180 SDCLIDLDTN YLLRSDVQNS NGHQTNEINV RDIVLDLPVS RCDAKLKDLM DEGKPANWRA 240 TNPFQPNEAM DLNTLASFLD LEDTWNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-55 | MYB family protein |