PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023922268.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 518aa    MW: 57628.5 Da    PI: 6.0119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023922268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.27.4e-1041165101374
            GRAS   1 lvelLlecAeavssgdle.laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn................ssee 77 
                     lv+lL+++Aea++ ++ + la+ +L rl+e++s    ++m+RlaayfteAL+  l +sv  + k  ++ ++++++                +++ 
  XP_023922268.1 116 LVHLLIAAAEALDGSKSRdLARVILVRLKEMVSDGTkTNMERLAAYFTEALQGLLESSVG-VHKHHHSDHSHSHStqsshnhnhnhnlhqsQTDI 209
                     68**********9866655************9988769*****************99542.2222211111111111223345666777666666 PP

            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLak 167
                     l+a++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR+egpp  +lRiT++ +  s+   s  +++etg+rL  
  XP_023922268.1 210 LTAFQLLQDMSPYVKFGHFTANQAILEAVAHDKRVHIVDYDIMEGIQWASLMQALVSRKEGPPdpHLRITAITRGGSSgrrSIGTVQETGRRLIA 304
                     777799*****************************************************888777********977778889999********** PP

            GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerfle 259
                     fA+++g pf+f+    ++ e+++++ L++ +gEal+Vn++l+l ++  +  ++    +++ +  ksl+P++v++ve+e+ +   ++++Fl rf++
  XP_023922268.1 305 FATSFGQPFSFHQCRLDSDETFRPSVLKLVRGEALVVNCMLNLPHFNFRAPDS---VSSFFSGAKSLNPRIVTLVEEELGLgpvGKPDFLGRFMD 396
                     *************9999*****************************8555554...459*******************776445899******** PP

            GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.e 353
                     +l++ysa++dslea++p +s++r+ vEr++lg++i+  +a   ++ re+ e+ ++W ++l + G+kpv++s+ + +qaklll+ ++ dgy+ve  
  XP_023922268.1 397 TLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRN-REKPEETSSWGDWLATTGLKPVTMSSANHCQAKLLLSLFN-DGYMVEdV 489
                     ********************************************9.788999**********************************.******45 PP

            GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                       + +vlgWk r+L+s+S+W+
  XP_023922268.1 490 ATNKIVLGWKLRRLLSASVWT 510
                     689999**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MSLVNNSTIA MAIAMDHVSL ELDHSGYGCD WQNWPSVVDW ESFQLQGHDD FQDLIESMMD  60
DGGLVLAPDW AVEIEGSHEE SHSNSNSNSN SNSNSSESTN MLVDEENDED YKGLKLVHLL  120
IAAAEALDGS KSRDLARVIL VRLKEMVSDG TKTNMERLAA YFTEALQGLL ESSVGVHKHH  180
HSDHSHSHST QSSHNHNHNH NLHQSQTDIL TAFQLLQDMS PYVKFGHFTA NQAILEAVAH  240
DKRVHIVDYD IMEGIQWASL MQALVSRKEG PPDPHLRITA ITRGGSSGRR SIGTVQETGR  300
RLIAFATSFG QPFSFHQCRL DSDETFRPSV LKLVRGEALV VNCMLNLPHF NFRAPDSVSS  360
FFSGAKSLNP RIVTLVEEEL GLGPVGKPDF LGRFMDTLHH YSAVYDSLEA GFPMQSRARA  420
LVERVFLGPR ISGSLARIYR NREKPEETSS WGDWLATTGL KPVTMSSANH CQAKLLLSLF  480
NDGYMVEDVA TNKIVLGWKL RRLLSASVWT TSSSDSDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-148GRAS family protein