PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920460.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 327aa MW: 37941.2 Da PI: 8.4652

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	19	40	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg F+ + +Lk+H+ +H XP_023920460.1 19 TCQECGAKFTKPAYLKQHMLSH 40 6*******************99 PP
2	zf-C2H2	19	3.8e-06	46	70	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp dC+ s++rk++L+rH+ H XP_023920460.1 46 YTCPvdDCHSSYRRKDHLTRHLLQH 70 9********************9887 PP
3	zf-C2H2	16.7	2.1e-05	75	100	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +Cg Fs + n++rH + H XP_023920460.1 75 FKCPieNCGHEFSYQGNMTRHVKEfH 100 89********************9988 PP
4	zf-C2H2	18.8	4.3e-06	115	139	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H XP_023920460.1 115 FVCQeiGCGKVFKFASKLRKHEESH 139 89*******************9988 PP
5	zf-C2H2	16.2	3e-05	206	230	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++Hi+ H XP_023920460.1 206 KCHydGCLHTFSTKSNLHQHIKAvH 230 79*******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEKNRVNGEE EKEGKKSNTC QECGAKFTKP AYLKQHMLSH SVERLYTCPV DDCHSSYRRK 60 DHLTRHLLQH QGKLFKCPIE NCGHEFSYQG NMTRHVKEFH SKDCPPINAE PQKQFVCQEI 120 GCGKVFKFAS KLRKHEESHV KLDSVEALCC EPGCMKYFSN EECLKSHIQS CHQHITCEIC 180 GTKQLRRNIK RHLQIHEDTV SLERVKCHYD GCLHTFSTKS NLHQHIKAVH LELKPFACSF 240 SGCGMRFAHK HVRDKHEKTG CHVHTFGDFE ESDNQFQSRI RGGRKRKCPT VEMLIRKRIT 300 PPSPPSQSDE ESDYLGWLHS QRTGNEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-125	C2H2 family protein