PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920459.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 374aa MW: 43618.8 Da PI: 8.3122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++H+ tH XP_023920459.1 21 YYCEYCGICRSKKSLVTSHMLTH 43 89********************6 PP
2	zf-C2H2	18.6	5.1e-06	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg F+ + +Lk+H+ +H XP_023920459.1 66 TCQECGAKFTKPAYLKQHMLSH 87 6*******************99 PP
3	zf-C2H2	18.8	4.5e-06	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp dC+ s++rk++L+rH+ H XP_023920459.1 93 YTCPvdDCHSSYRRKDHLTRHLLQH 117 9********************9887 PP
4	zf-C2H2	16.4	2.5e-05	122	147	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +Cg Fs + n++rH + H XP_023920459.1 122 FKCPieNCGHEFSYQGNMTRHVKEfH 147 89********************9988 PP
5	zf-C2H2	18.6	5.1e-06	162	186	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H XP_023920459.1 162 FVCQeiGCGKVFKFASKLRKHEESH 186 89*******************9988 PP
6	zf-C2H2	15.9	3.6e-05	253	277	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++Hi+ H XP_023920459.1 253 KCHydGCLHTFSTKSNLHQHIKAvH 277 79*******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MAEMDEMGEI EKPIFRDIRR YYCEYCGICR SKKSLVTSHM LTHHKEEMEK NRVNGEEEKE 60 GKKSNTCQEC GAKFTKPAYL KQHMLSHSVE RLYTCPVDDC HSSYRRKDHL TRHLLQHQGK 120 LFKCPIENCG HEFSYQGNMT RHVKEFHSKD CPPINAEPQK QFVCQEIGCG KVFKFASKLR 180 KHEESHVKLD SVEALCCEPG CMKYFSNEEC LKSHIQSCHQ HITCEICGTK QLRRNIKRHL 240 QIHEDTVSLE RVKCHYDGCL HTFSTKSNLH QHIKAVHLEL KPFACSFSGC GMRFAHKHVR 300 DKHEKTGCHV HTFGDFEESD NQFQSRIRGG RKRKCPTVEM LIRKRITPPS PPSQSDEESD 360 YLGWLHSQRT GNEL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MAEMDEMGEI EKPIFRDIRR YYCEYCGICR SKKSLVTSHM LTHHKEEMEK NRVNGEEEKE  60
GKKSNTCQEC GAKFTKPAYL KQHMLSHSVE RLYTCPVDDC HSSYRRKDHL TRHLLQHQGK  120
LFKCPIENCG HEFSYQGNMT RHVKEFHSKD CPPINAEPQK QFVCQEIGCG KVFKFASKLR  180
KHEESHVKLD SVEALCCEPG CMKYFSNEEC LKSHIQSCHQ HITCEICGTK QLRRNIKRHL  240
QIHEDTVSLE RVKCHYDGCL HTFSTKSNLH QHIKAVHLEL KPFACSFSGC GMRFAHKHVR  300
DKHEKTGCHV HTFGDFEESD NQFQSRIRGG RKRKCPTVEM LIRKRITPPS PPSQSDEESD  360
YLGWLHSQRT GNEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-143	C2H2 family protein