PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023920232.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 368aa    MW: 40456.6 Da    PI: 8.132
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023920232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07163182626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C f+ + GtC yGd+C++ H+
  XP_023920232.1 163 CEFWVQ-GTCVYGDQCPYLHS 182
                     ******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MEINTARRGP QGKESSVFDR LGAGRGGHLN NSSNKICKFW LSGRCLKNPC RFAHSETPDV  60
ATIHRSRQTP YYPHSSNALV SNTWRRGPRN SQNVQEKVVN HKSSKNVPGK SESDLEDIKK  120
KSPESVSESS SECSVVESDS NLENVVEEKP LEHVPKKTAE MVCEFWVQGT CVYGDQCPYL  180
HSWFRGDKFK RLAELQGHSK AVNGIALPLR CNKLCSGSSD GTIRLWDCHT GQCANVINLG  240
SEVGSVCSEG PWLFVGLPNV VKVWNTESGA EYNLNGPVGQ VNALESVNDL LFAGVEDGVI  300
LAWKGTCESN LTFQLAATLK GHTHGITSLV VGGGNRLYSG SKDHTIRVSF FSLRFFSPLL  360
FYLLFMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.19e-68C3H family protein