PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919697.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 452aa MW: 49525.3 Da PI: 9.2378

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	339	364	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cgk++++ +L++H r+ H XP_023919697.1 339 HRCThpGCGKTYPSAGELTKHVRRcH 364 689999******************66 PP
2	zf-C2H2	11	0.0013	403	431	1	23
EEET..TTT...EEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCg...ksFsrksnLkrHirt.H 23 y Cp C+ + Fsr+++L rH++t H XP_023919697.1 403 YFCPhdSCPyaaTGFSRSDHLDRHLKTkH 431 67888899999999************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MNSFDFPSQD LFDQAGTWND HDDPSLDIDL FLEQVWSKPS STTPGRSGLT PSQQVSLHLP 60 ECTLRHLSAE ECWYCNLQPG VYQEQATPRQ ASRQYDSYGA ASSSSSSFPL ANASASYQAS 120 AAWPQQYPSM PTTQSNRAAR TQPDPSRQYT VAAAALAQQP RSGASPGMLY GTNGASSYYP 180 SQAAWQAPNQ VQPLYYAASN AAPQPNTRSS GRISRPIPVQ GQPHAGAHQQ QQRQHQQRGT 240 AQRLSTRTTP QPFLHSQLSG GLLLRTDHQA RPTNGGPHDV ASWNDQPRVA GDRSTMPTTT 300 TRHLHPTGQS SPISEHSSSG ASRRRDAAQM CQLAGSNQHR CTHPGCGKTY PSAGELTKHV 360 RRCHCDPRDR PHACPIPGCA QRFNFPREVR RHIAARHEDA NHYFCPHDSC PYAATGFSRS 420 DHLDRHLKTK HRVGSAGASV AMSRTSSSSR TY

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MNSFDFPSQD LFDQAGTWND HDDPSLDIDL FLEQVWSKPS STTPGRSGLT PSQQVSLHLP  60
ECTLRHLSAE ECWYCNLQPG VYQEQATPRQ ASRQYDSYGA ASSSSSSFPL ANASASYQAS  120
AAWPQQYPSM PTTQSNRAAR TQPDPSRQYT VAAAALAQQP RSGASPGMLY GTNGASSYYP  180
SQAAWQAPNQ VQPLYYAASN AAPQPNTRSS GRISRPIPVQ GQPHAGAHQQ QQRQHQQRGT  240
AQRLSTRTTP QPFLHSQLSG GLLLRTDHQA RPTNGGPHDV ASWNDQPRVA GDRSTMPTTT  300
TRHLHPTGQS SPISEHSSSG ASRRRDAAQM CQLAGSNQHR CTHPGCGKTY PSAGELTKHV  360
RRCHCDPRDR PHACPIPGCA QRFNFPREVR RHIAARHEDA NHYFCPHDSC PYAATGFSRS  420
DHLDRHLKTK HRVGSAGASV AMSRTSSSSR TY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	3e-06	C2H2 family protein