PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919371.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 709aa MW: 77167.8 Da PI: 5.9356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_023919371.1 279 PCPEFRK-GSCRQGDACEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MCSGSKRKPS QTGFSMAGGF EKQEALQPRF SILLELSASD DLTGFKSAVE EEGLDFDESS 60 LWYGRRNGSK VMGFEERTPL MIAAMFGSKG VLNYILETGL VDVNRACGSD GATALHCAVA 120 GGSPCSVEVV KLLLDASADI NSLDANRKRP GDLITPVSSP AFNSWMKKLE VMLKVFSGIE 180 ETFGLPDQIG DEMEGPEQLE ASSPWVSKDA TEKKEYPVDL SLPDIKNGIY STDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI 300 FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SFSANTSQLD 360 MGSISPLALG SPSSMMPSNS TPPMTPSGAT SPMGGTMWQN QSSLVPPSLQ LPGSRLKTAL 420 CARDMELDLE LLGLENQRRR QQQLMDEISG LSSPSGWKSP MSNTSAFAAS LGDRTGELNR 480 LGGVKPTNLD DFFGSLDPAL MPQFQALSLD VSVPQLQSPT GAKKRQNMNQ QLRSSYSTGL 540 SSSPVRASSS FGVDPSSAAA ALTSRSAAFA TRSQSFIERS AVNRHSGVSS PRASASVRPS 600 AFSDWGSPDG KLDWGLQGEE LNKLRKSASF GFRSSGSSYA TAAAMMPATV NEPDVSWVQS 660 LVKDVPPAKP GQLNFEKEQQ QQCHLDTGDS EMLPAWVEQL YKEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MCSGSKRKPS QTGFSMAGGF EKQEALQPRF SILLELSASD DLTGFKSAVE EEGLDFDESS  60
LWYGRRNGSK VMGFEERTPL MIAAMFGSKG VLNYILETGL VDVNRACGSD GATALHCAVA  120
GGSPCSVEVV KLLLDASADI NSLDANRKRP GDLITPVSSP AFNSWMKKLE VMLKVFSGIE  180
ETFGLPDQIG DEMEGPEQLE ASSPWVSKDA TEKKEYPVDL SLPDIKNGIY STDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SFSANTSQLD  360
MGSISPLALG SPSSMMPSNS TPPMTPSGAT SPMGGTMWQN QSSLVPPSLQ LPGSRLKTAL  420
CARDMELDLE LLGLENQRRR QQQLMDEISG LSSPSGWKSP MSNTSAFAAS LGDRTGELNR  480
LGGVKPTNLD DFFGSLDPAL MPQFQALSLD VSVPQLQSPT GAKKRQNMNQ QLRSSYSTGL  540
SSSPVRASSS FGVDPSSAAA ALTSRSAAFA TRSQSFIERS AVNRHSGVSS PRASASVRPS  600
AFSDWGSPDG KLDWGLQGEE LNKLRKSASF GFRSSGSSYA TAAAMMPATV NEPDVSWVQS  660
LVKDVPPAKP GQLNFEKEQQ QQCHLDTGDS EMLPAWVEQL YKEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein