PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918793.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 579aa MW: 62388.1 Da PI: 9.5632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023918793.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	13.1	0.00028	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_023918793.1 146 WKCEKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MASSSSSTLF FGTREENQSQ TAQQPSSTIT SSTTPTTAPQ KKRRNQPGNP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTNKEPKRKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SARHPTNLNT MGSHLFGGNN MSLGLSQLGS QIPPLQNQNP 240 PSSNMLRLGS AGGAKFEHLI SASNPSSFGQ PPQSMHSSSL FIQDANQGFP NKPQLHGLMQ 300 LPDLQSNSNN SSPAASLFNL SFFPNNNSSP GGMSSGDNVN ISSTNLSSSG LLMQDQLNNS 360 NGGSQGTTLF STNMGDHVGS GVSSLYSNSL PPENITSHMS ATALLQKAAQ MGSTTSSNNS 420 SSMLRGLASS KSEKQNVLAN FGISFGNDNG GESLRSHIES GNHLQGLMNS LANASSSMFG 480 RGQDNNFGGF NGSGVTLDQH HSNTNFSTVD EAKLHQNLAV NFGGSDKLTL DFLGVGGMVR 540 NMGGGYSQRE QHAINMSSLE PELKTAQQAS QAFGSTTMQ

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MASSSSSTLF FGTREENQSQ TAQQPSSTIT SSTTPTTAPQ KKRRNQPGNP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTNKEPKRKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SARHPTNLNT MGSHLFGGNN MSLGLSQLGS QIPPLQNQNP  240
PSSNMLRLGS AGGAKFEHLI SASNPSSFGQ PPQSMHSSSL FIQDANQGFP NKPQLHGLMQ  300
LPDLQSNSNN SSPAASLFNL SFFPNNNSSP GGMSSGDNVN ISSTNLSSSG LLMQDQLNNS  360
NGGSQGTTLF STNMGDHVGS GVSSLYSNSL PPENITSHMS ATALLQKAAQ MGSTTSSNNS  420
SSMLRGLASS KSEKQNVLAN FGISFGNDNG GESLRSHIES GNHLQGLMNS LANASSSMFG  480
RGQDNNFGGF NGSGVTLDQH HSNTNFSTVD EAKLHQNLAV NFGGSDKLTL DFLGVGGMVR  540
NMGGGYSQRE QHAINMSSLE PELKTAQQAS QAFGSTTMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-119	C2H2 family protein