PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918492.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 352aa MW: 38625.9 Da PI: 8.469

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	47	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + XP_023918492.1 47 KGPWSAEEDEALQRLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 92 79****************************.*********985 PP
2	Myb_DNA-binding	55.4	1.4e-17	101	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_023918492.1 101 AFTPEEDETIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 143 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MFTQIRSQQK QYPNSLSLAK PLSISQNLFF LYDPLMAMNK MEMDRIKGPW SAEEDEALQR 60 LVQKHGPRNW SLISKAIPGR SGKSCRLRWC NQLSPQVEHR AFTPEEDETI IRAHARFGNK 120 WATIARLLSG RTDNAIKNHW NSTLKRKCFS DGGYDGNFDQ QQLQPLKRSM SAGSDAPVPI 180 YMNPSSPSGS DVSDSSVPVV SSSHVYRPVA RTGSVVPPIE TTSSTTATND PPTSLSLSLP 240 GVESCEVSNT VSQVANTLNL MPEKEKEGNG EEDRSIGLVP LSAELMAVMQ EMIRKEVRSY 300 MTGLKEQTGA GSGICMGMGM GMGMGMNMGM GMRGEDGFRD VAVKRIGVGR LD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MFTQIRSQQK QYPNSLSLAK PLSISQNLFF LYDPLMAMNK MEMDRIKGPW SAEEDEALQR  60
LVQKHGPRNW SLISKAIPGR SGKSCRLRWC NQLSPQVEHR AFTPEEDETI IRAHARFGNK  120
WATIARLLSG RTDNAIKNHW NSTLKRKCFS DGGYDGNFDQ QQLQPLKRSM SAGSDAPVPI  180
YMNPSSPSGS DVSDSSVPVV SSSHVYRPVA RTGSVVPPIE TTSSTTATND PPTSLSLSLP  240
GVESCEVSNT VSQVANTLNL MPEKEKEGNG EEDRSIGLVP LSAELMAVMQ EMIRKEVRSY  300
MTGLKEQTGA GSGICMGMGM GMGMGMNMGM GMRGEDGFRD VAVKRIGVGR LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-91	MYB family protein