PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023917056.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 486aa MW: 54110.3 Da PI: 8.544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023917056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	42	70	1	23
EEET.....TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp.....dCgksFsrksnLkrHirt.H 23 ++C Cgk F++ L +H+ H XP_023917056.1 42 FRCDwdqqySCGKKFTTAGGLSVHMTQvH 70 6788888889***************8766 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MSKKRKDIPD LQEALDKRWC YYCERIFQDD KVLCDHQRYK HFRCDWDQQY SCGKKFTTAG 60 GLSVHMTQVH KTKLEKIQNT IDGRENPAVE IFGMLGIPQE LLDAHRREIE TQYYQAEAEH 120 RARTGNPLRG PNPNAGKKQV EELTHEEKMA KLEAHRAKNR ANKAAREAGY KDVEDQARQL 180 AAQNSAQNVT TVESVDAFAN MQPPVPGFQT QPPYNVTMAG SPLSPHPQFL PPAYSANSSA 240 SPGPGPYNNG FISHSPNHNT NNGFVPLPYA NGNFGIQPQT NGFVAPPQEF SGYQAPMPPQ 300 PRATPQSQSS STPLPAPTPG LPARPSFNSI PNFTREEMAQ LHGAGQPPPS LNAHNKRIPR 360 VTAPSSGHTT DNKEFSASLA DMINQEAQNA QNKNGFEHVP EEQDHAAENT STITPAKTQF 420 KKPKSKKDNQ VMKVQDQVVS LEELKAADRK FVSTFLPQPT SNNLRDANGI PWYIAMFQDK 480 RAERNC

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MSKKRKDIPD LQEALDKRWC YYCERIFQDD KVLCDHQRYK HFRCDWDQQY SCGKKFTTAG  60
GLSVHMTQVH KTKLEKIQNT IDGRENPAVE IFGMLGIPQE LLDAHRREIE TQYYQAEAEH  120
RARTGNPLRG PNPNAGKKQV EELTHEEKMA KLEAHRAKNR ANKAAREAGY KDVEDQARQL  180
AAQNSAQNVT TVESVDAFAN MQPPVPGFQT QPPYNVTMAG SPLSPHPQFL PPAYSANSSA  240
SPGPGPYNNG FISHSPNHNT NNGFVPLPYA NGNFGIQPQT NGFVAPPQEF SGYQAPMPPQ  300
PRATPQSQSS STPLPAPTPG LPARPSFNSI PNFTREEMAQ LHGAGQPPPS LNAHNKRIPR  360
VTAPSSGHTT DNKEFSASLA DMINQEAQNA QNKNGFEHVP EEQDHAAENT STITPAKTQF  420
KKPKSKKDNQ VMKVQDQVVS LEELKAADRK FVSTFLPQPT SNNLRDANGI PWYIAMFQDK  480
RAERNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	5e-28	C2H2 family protein