PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023917047.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 414aa MW: 46828 Da PI: 9.9801

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023917047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.5e-16	6	51	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ed+ll+++v+ +G ++W +I++t++ +R++kqc++r+++ XP_023917047.1 6 RGPWSQNEDQLLLHLVNVHGAHNWVRISSTIQ-TRSPKQCRERFHQN 51 89****************************.*********986 PP
2	Myb_DNA-binding	39.8	1.1e-12	60	100	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + T+eE el+ + v+++G++ W+ Iar++ gR+++ +k++w+ XP_023917047.1 60 PITPEEGELIEQMVAEMGKR-WAEIARRLR-GRSDNAVKNWWN 100 67****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MPQHKRGPWS QNEDQLLLHL VNVHGAHNWV RISSTIQTRS PKQCRERFHQ NLKPNLNHDP 60 ITPEEGELIE QMVAEMGKRW AEIARRLRGR SDNAVKNWWN GGMNRRRRSN NHRRTNADVK 120 RPSTSDSNTI QQGEPIQAPI QSHHHALPPQ FVQQMPQAMH QAIMPQQFFG QAMYHPTPMT 180 HGLQPHMNVP STMQMYQRHP GMIETPLPSP SAYSHMSAEG APSLISDCSS ISTRSPHDGT 240 SPIELPPLSG SRDERRHSSA PMLRLGVPGT FVSDTDFQGQ PMMIKARHEP QHMMQEMPFM 300 PHHQHFQPQP YLPSQPRQPS PLQHAQMMPP QQYHAVAQQM QRAQVYMHQQ PLPSTPMHLP 360 SISKLSTPTD SKPNTASGTG IFIDPAHDLN SPVVTLSTPD GSPKDKMSLS NLTH

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MPQHKRGPWS QNEDQLLLHL VNVHGAHNWV RISSTIQTRS PKQCRERFHQ NLKPNLNHDP  60
ITPEEGELIE QMVAEMGKRW AEIARRLRGR SDNAVKNWWN GGMNRRRRSN NHRRTNADVK  120
RPSTSDSNTI QQGEPIQAPI QSHHHALPPQ FVQQMPQAMH QAIMPQQFFG QAMYHPTPMT  180
HGLQPHMNVP STMQMYQRHP GMIETPLPSP SAYSHMSAEG APSLISDCSS ISTRSPHDGT  240
SPIELPPLSG SRDERRHSSA PMLRLGVPGT FVSDTDFQGQ PMMIKARHEP QHMMQEMPFM  300
PHHQHFQPQP YLPSQPRQPS PLQHAQMMPP QQYHAVAQQM QRAQVYMHQQ PLPSTPMHLP  360
SISKLSTPTD SKPNTASGTG IFIDPAHDLN SPVVTLSTPD GSPKDKMSLS NLTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-24	MYB family protein