PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023916115.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 332aa    MW: 36532.4 Da    PI: 8.0725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023916115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10173193525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      C+++ +tG+C +Gd+CkF H
  XP_023916115.1 173 VCKDYKQTGYCGFGDSCKFLH 193
                     7******************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MADVAATAAA PPTFKKRVNK NIRKRPATPP PAATDSPSDA STDDDDDDND DEANVRIKRR  60
RTTGLQSSTS TSLSAKPPAD LSKATKFAAD KSLTIASSDD ATRTSHWETE TARSVVPATT  120
STSASPATDG TYRGPSTYGT FIAKSRDRPV VGPVRGAASN VRQVTVTDFA PDVCKDYKQT  180
GYCGFGDSCK FLHAREDYQA GWQLDQEWEK TKKKNRKQNA NQKKVTAEDV VDDDDDEEQK  240
LLASIPFKCI ICKGPYDRPV VTRCRHYFCE KCAMTRYMKE KKKGCANCGA DTNGTFNAAR  300
KLTELLERKR KRVEEARSRE GDGEEDEEGG DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-38C3H family protein