PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023915570.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 511aa MW: 54653.7 Da PI: 8.2394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023915570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H XP_023915570.1 94 YKCSVCNKAFSSYQALGGHKASH 116 9***********99999998887 PP
2	zf-C2H2	12.5	0.00045	357	379	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H XP_023915570.1 357 YKCSVCNKAFSSYQALGGHKASH 379 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MALEALNSPT TATPQFHFDD ANLHCLDSWT KRKRSKRPRF ENAPTEEEYL ALCLIMLARG 60 GATEPDTTTT APRHQTPPPT VTSSAATTTT NPIYKCSVCN KAFSSYQALG GHKASHRKLA 120 SGGVGVGDDH SSSSTTSATA TATATVSNSS GRSHECSICH KSFPTGQALG GHKRCHYEGG 180 NPSHSHSGVT TSEGVGSTQT NTHKRDFDLN LPALPEVSPK FVFGEDEVES PLPTKKPRFL 240 TPLKLEISYV GDRSNIILVS KRDMALEALN SPTTATPQFH FDDANLHCLD SWTKRKRSKR 300 PRFENAPTEE EYLALCLIML ARGGATEPDT TTTAPRHQTP PPTVTSSAAT TTTNPIYKCS 360 VCNKAFSSYQ ALGGHKASHR KLASGGVGVG DDHSSSSTTS ATATATATVS NSSGRSHECS 420 ICHKSFPTGQ ALGGHKRCHY EGGNPSHSHS GVTTSEGVGS TQTNTHKRDF DLNLPALPEV 480 SPKFVFGEDE VESPLPTKKP RFLTPLKLEI S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MALEALNSPT TATPQFHFDD ANLHCLDSWT KRKRSKRPRF ENAPTEEEYL ALCLIMLARG  60
GATEPDTTTT APRHQTPPPT VTSSAATTTT NPIYKCSVCN KAFSSYQALG GHKASHRKLA  120
SGGVGVGDDH SSSSTTSATA TATATVSNSS GRSHECSICH KSFPTGQALG GHKRCHYEGG  180
NPSHSHSGVT TSEGVGSTQT NTHKRDFDLN LPALPEVSPK FVFGEDEVES PLPTKKPRFL  240
TPLKLEISYV GDRSNIILVS KRDMALEALN SPTTATPQFH FDDANLHCLD SWTKRKRSKR  300
PRFENAPTEE EYLALCLIML ARGGATEPDT TTTAPRHQTP PPTVTSSAAT TTTNPIYKCS  360
VCNKAFSSYQ ALGGHKASHR KLASGGVGVG DDHSSSSTTS ATATATATVS NSSGRSHECS  420
ICHKSFPTGQ ALGGHKRCHY EGGNPSHSHS GVTTSEGVGS TQTNTHKRDF DLNLPALPEV  480
SPKFVFGEDE VESPLPTKKP RFLTPLKLEI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	6e-55	C2H2 family protein