PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023915187.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 585aa MW: 68824.4 Da PI: 8.1058

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023915187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.8e-08	96	123	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023915187.1 96 WKVAICGEYMKSRfkTCSHGTACNFIHC 123 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MAITLRGLKM QATILHTDEE VEGCYEEFYE DVHTEFLKFG EIVNFKVCRN GAFHLRGNVY 60 VQYKSLDSAV LVYNSINGRY FAGKQISCEF VNVTRWKVAI CGEYMKSRFK TCSHGTACNF 120 IHCFRNPGGD YEWADFDKPP PRYWVRKMAS LFGYSDEVGY QKEVEQENLG QLRHSRKRLT 180 DVDSSSNFHG RYYSRSKSKE IDYLNGGGSS RRNDNKNDMQ KSTQRRGRTS NDRKQMEVLD 240 EDMRGEKTNF KGGSYRKSRS HDTDSEGEWS DRYKDRYYGS ARKSSRLRNR DVNHRTHEVE 300 SEGGYSDRSE DRETHDGHAR KSSRHSRNAK FVDDCEDQEK FGGNWSDRDG DQETHDAYMT 360 KSSRHRRKVG HPDDRMDSKN RTHDTDGEWS DGERDRDRHH RKRSESSRHL RKVGHSDDHK 420 DSKNRSHDPE GEWSDRDTNR DRHHHKKRKS SRRDHDHGGS KNRADDTNLI SDWLDSDGER 480 HKSQTRKHTR HRNEALDYSD DEGEPAKKLK DKFHSRESSI EKSGLERGSM HSHSRWDSIN 540 ENLESDGSRE SNSSDQYVQR HKLHDLESSY NSDKYIDKQD RWEPD

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MAITLRGLKM QATILHTDEE VEGCYEEFYE DVHTEFLKFG EIVNFKVCRN GAFHLRGNVY  60
VQYKSLDSAV LVYNSINGRY FAGKQISCEF VNVTRWKVAI CGEYMKSRFK TCSHGTACNF  120
IHCFRNPGGD YEWADFDKPP PRYWVRKMAS LFGYSDEVGY QKEVEQENLG QLRHSRKRLT  180
DVDSSSNFHG RYYSRSKSKE IDYLNGGGSS RRNDNKNDMQ KSTQRRGRTS NDRKQMEVLD  240
EDMRGEKTNF KGGSYRKSRS HDTDSEGEWS DRYKDRYYGS ARKSSRLRNR DVNHRTHEVE  300
SEGGYSDRSE DRETHDGHAR KSSRHSRNAK FVDDCEDQEK FGGNWSDRDG DQETHDAYMT  360
KSSRHRRKVG HPDDRMDSKN RTHDTDGEWS DGERDRDRHH RKRSESSRHL RKVGHSDDHK  420
DSKNRSHDPE GEWSDRDTNR DRHHHKKRKS SRRDHDHGGS KNRADDTNLI SDWLDSDGER  480
HKSQTRKHTR HRNEALDYSD DEGEPAKKLK DKFHSRESSI EKSGLERGSM HSHSRWDSIN  540
ENLESDGSRE SNSSDQYVQR HKLHDLESSY NSDKYIDKQD RWEPD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-79	C3H family protein