PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023915000.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 324aa MW: 36894.1 Da PI: 7.2475

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023915000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	186	211	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_023915000.1 186 YQPDICKDYKETGYCGYGDSCKFIHD 211 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MSDLGENQQP EQVCNFFRKP SKNKNIRKRT VDEDEKEDSK TEGSFLHSQK KTIKPNNKLY 60 FSTGSSKNKM STEAKEESEK PIFQFESSKE IQIEHDSRAT ATLETETEFS RDARALCERS 120 LKQAEEALKG GGKSSGDEKL YKGIHGYTDY KAGFRREQTF ASGKAGGAHG PLRASAHIRV 180 FARFDYQPDI CKDYKETGYC GYGDSCKFIH DRGDYKSGWQ MEKEWDEAEK ARKRNLALGL 240 DDEDDGSVDP GEEDDKDDSL PFACFICRQP FVDAIVTKCK HYFCEHCALK HHAKNKKCFV 300 CNKPTLGIFN TAHEIRKWIA VEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-162	C3H family protein