PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023914834.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25632.4 Da PI: 6.3115 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+e+ss XP_023914834.1 9 KKIDNVTARQVTFSKRRRGLIKKAEELSVLCDAEVALIIFSATGKLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 46.2 | 1.9e-16 | 87 | 171 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + ++ +L ke+ +++R++ GedL+ L+l +L +Le+ Le +l+++ + K+e ++++i++l kk +l eenk+L++k++ XP_023914834.1 87 QLENGNHVRLSKEVADKTNQLRQMRGEDLQGLNLDDLLKLEKVLEAGLTRVLESKEEKIMNEISTLEKKGSQLMEENKQLKQKMM 171 5555667789999999999***************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MAREKIKIKK IDNVTARQVT FSKRRRGLIK KAEELSVLCD AEVALIIFSA TGKLFEFSSS 60 SMKEILERYH LHSNSLEKMD QPSLELQLEN GNHVRLSKEV ADKTNQLRQM RGEDLQGLNL 120 DDLLKLEKVL EAGLTRVLES KEEKIMNEIS TLEKKGSQLM EENKQLKQKM MMLSKGKRSG 180 LVDSDIMIQE EGMSSDQSVT NVYSCNSGPP PEDDSSDTSL RLGLSLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-80 | MIKC_MADS family protein |