PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023914833.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25990.9 Da    PI: 6.8045
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023914833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.7e-281262151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+e+ss
  XP_023914833.1 12 KKIDNVTARQVTFSKRRRGLIKKAEELSVLCDAEVALIIFSATGKLFEFSS 62
                    68***********************************************96 PP
2K-box46.12.1e-16901741599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  + ++ +L ke+    +++R++ GedL+ L+l +L +Le+ Le +l+++ + K+e ++++i++l kk  +l eenk+L++k++
  XP_023914833.1  90 QLENGNHVRLSKEVADKTNQLRQMRGEDLQGLNLDDLLKLEKVLEAGLTRVLESKEEKIMNEISTLEKKGSQLMEENKQLKQKMM 174
                     5555667789999999999***************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MARMAREKIK IKKIDNVTAR QVTFSKRRRG LIKKAEELSV LCDAEVALII FSATGKLFEF  60
SSSSMKEILE RYHLHSNSLE KMDQPSLELQ LENGNHVRLS KEVADKTNQL RQMRGEDLQG  120
LNLDDLLKLE KVLEAGLTRV LESKEEKIMN EISTLEKKGS QLMEENKQLK QKMMMLSKGK  180
RSGLVDSDIM IQEEGMSSDQ SVTNVYSCNS GPPPEDDSSD TSLRLGLSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-80MIKC_MADS family protein