PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913496.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 600aa MW: 65760 Da PI: 6.5598

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.8	2.9e-25	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ +++ XP_023913496.1 126 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDVHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM--RNT 216 89*******************999985444444..9********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++++v+v+r+ XP_023913496.1 217 RGQMFVGVRRA 227 9999**996 PP
2	Auxin_resp	90.6	2.8e-30	279	362	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Pra++s+Fv k+e ve+al+v ++ Gm++kma+etedss+ ++ +Gtv++ d +W++S+Wr+L+ XP_023913496.1 279 AAELAAQGLPFEVVYYPRAGWSDFVLKAEVVEEALNVFWTSGMKVKMAMETEDSSRMTWfQGTVSAAVVPDGGSWQGSPWRMLQ 362 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MPPQLHPPSP PGNLRRLDSK IWRACAGTSV QIPIVHSRVY YFPQGHVEQS SPPPTFLSPT 60 VLSRPLISCR ISAVDFLADP VTDEVFARLL LHPIHSQQSF VDCPSEPSRS RNDVAAAAGE 120 DKILSFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLSVTD VHGVVWEFRH 180 IYRGTPRRHL LTTGWSKFVN HKKLVAGDSV VFMRNTRGQM FVGVRRAVRF NNDCAAARWS 240 SQIGGGTTRL KPEDDNACAR DGFSRIGMGK LTAEAVAEAA ELAAQGLPFE VVYYPRAGWS 300 DFVLKAEVVE EALNVFWTSG MKVKMAMETE DSSRMTWFQG TVSAAVVPDG GSWQGSPWRM 360 LQVTWDEPEV LHNAKRVSPW QVEVLSPTAP VHTALPPTKK FRTPQSAGQL TEGEGDLFFP 420 FSGYTNSTMG HMSQTLLNYN NFPASMQGAR QNLFSKSSLS NFICENSMCI DNSFGNNMVP 480 KLKSVSTELN IGSSQSENLS PDSQSSMHSS FGTEFVGTQY CSSPKVGTGS FQLFGKIIHT 540 NQPVESGFDD IGCAEDDGSK GYNETDDVNN PLDHSLNYTK LLDRLDVQCQ RASAVGACNL

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MPPQLHPPSP PGNLRRLDSK IWRACAGTSV QIPIVHSRVY YFPQGHVEQS SPPPTFLSPT  60
VLSRPLISCR ISAVDFLADP VTDEVFARLL LHPIHSQQSF VDCPSEPSRS RNDVAAAAGE  120
DKILSFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLSVTD VHGVVWEFRH  180
IYRGTPRRHL LTTGWSKFVN HKKLVAGDSV VFMRNTRGQM FVGVRRAVRF NNDCAAARWS  240
SQIGGGTTRL KPEDDNACAR DGFSRIGMGK LTAEAVAEAA ELAAQGLPFE VVYYPRAGWS  300
DFVLKAEVVE EALNVFWTSG MKVKMAMETE DSSRMTWFQG TVSAAVVPDG GSWQGSPWRM  360
LQVTWDEPEV LHNAKRVSPW QVEVLSPTAP VHTALPPTKK FRTPQSAGQL TEGEGDLFFP  420
FSGYTNSTMG HMSQTLLNYN NFPASMQGAR QNLFSKSSLS NFICENSMCI DNSFGNNMVP  480
KLKSVSTELN IGSSQSENLS PDSQSSMHSS FGTEFVGTQY CSSPKVGTGS FQLFGKIIHT  540
NQPVESGFDD IGCAEDDGSK GYNETDDVNN PLDHSLNYTK LLDRLDVQCQ RASAVGACNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	0.0	ARF family protein