PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023911881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 32843.3 Da PI: 8.7955 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l+ ++k +G g W+ +++ g++R++k+c++rw++yl XP_023911881.1 13 RGAWSAWEDNILKSYIKIHGEGKWTDLPQRAGLRRCGKSCRLRWLNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.5e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG+ W++Iar+++ gRt++++k++w++ XP_023911881.1 66 RGNFSKDEEDLIIKLHKLLGNS-WSLIARRLP-GRTDNEIKNYWNTI 110 89******************99.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence |
MERRPCCAKG VIRGAWSAWE DNILKSYIKI HGEGKWTDLP QRAGLRRCGK SCRLRWLNYL 60 RPDIKRGNFS KDEEDLIIKL HKLLGNSWSL IARRLPGRTD NEIKNYWNTI LSKRVQSDKI 120 HEQSSRILKS IGRIRKLTSD SNPRIKPVAH PVIRPKAMRC TKVILPWQPD NNQIFNENIV 180 PYGNSENLFP SAQPENNISD FLVDLDTNYL SRSDVQNSDG HQTNEINVHD IVLDLPVSGC 240 DAKLKDLMDE GKFENWRAIN PFQPNEATDL NTLASFLDSE DTWIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-54 | MYB family protein |