PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023911376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22294.3 Da PI: 7.2744 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.1e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA r+rdPvyG+vg+i++lqqq+ +l+ael XP_023911376.1 9 PCGACKFLRRKCVNGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALSRVRDPVYGCVGHIFTLQQQVVNLQAEL 103 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_023911376.1 104 AYVQAH 109 **9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MSASNGGGPC GACKFLRRKC VNGCVFAPYF DSEQGTAHFA AVHKVFGASN ASKLLLRIPA 60 HKRLDAVVTL CYEALSRVRD PVYGCVGHIF TLQQQVVNLQ AELAYVQAHL STFQRLPPLP 120 PPQSQSPSPT NHHHCTSDLA TSSDLQHSLS MQIDPIQPQP TSTELTSYFD PLAEELEDGD 180 VQALARELIS RYLPGVRFRA SSPH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 5e-70 | LBD family protein |