PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00210.1 | ||||||||
Common Name | ASL22, F6N15.25, LBD31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23806.8 Da PI: 5.6017 | ||||||||
Description | LOB domain-containing protein 31 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 2e-38 | 11 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC++dCv+apyf + + +++f +vhk+FGasn +kll +p ++r da+ +l+yeA ar+rdPvyG+vg+i++lq+q+++l+aela++ AT4G00210.1 11 PCGACKFLRRKCVADCVFAPYFDSVEgTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYV 108 7*********************996659********************************************************************** PP DUF260 98 keel 101 +++l AT4G00210.1 109 QTQL 112 9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI 60 PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN LQAELAYVQT QLSTLQGLPP 120 PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD 180 LSTFFGLENP VDEDGDLNAL AREFFTKYLT GGKYRPSSLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 4 | 119 | 4 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 4 | 119 | 4 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240255698 | 0.0 | ||||
Expression Atlas | AT4G00210 | - | ||||
AtGenExpress | AT4G00210 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473855 | 0.0 | AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191932.4 | 1e-164 | LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 1e-165 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A178UT63 | 1e-163 | A0A178UT63_ARATH; LBD31 | ||||
STRING | AT4G00210.1 | 1e-164 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 | Representative plant | OGRP405 | 15 | 100 |
Link Out ? help Back to Top | |
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Phytozome | AT4G00210.1 |
Entrez Gene | 828114 |
iHOP | AT4G00210 |
wikigenes | AT4G00210 |