PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023911048.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 368aa MW: 39722.3 Da PI: 6.998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023911048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25.4	3.6e-08	299	321	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k+F+r+s+L++Hi +H XP_023911048.1 299 HKCKICDKRFTRPSSLQTHIYSH 321 79******************998 PP
2	zf-C2H2	18.4	6.1e-06	327	351	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C Cg++Fs snL+rH ++H XP_023911048.1 327 FACDvgGCGRHFSVVSNLRRHRKVH 351 679999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MALAVDNRQQ QQQFSSASYD NMRYPQPQFT NPWVSAPPTG HSHMYATAAS SASDPSRYAA 60 HAPNVSAAYS STQLPAPSLA SGILPLDPDL FDQTNLQFAQ DMSAPRPYGS AYNPSSATSS 120 TASSYAPTSA PQFASYGYQA DRRPSHPSVA FSYLDDQLEN LSVDMSDRFN TTSEAERQGY 180 NDALDASRGM VQMSQTDITP RNIYGGNAMR NPTDSYGFPT AHSSHSSISS ASTYPTYYNS 240 SVSEASVGDY SSANESIDVP NSRTLPRPSG LIAGSLPPAP QSMMGQFSSK VSSSSQKKHK 300 CKICDKRFTR PSSLQTHIYS HTGEKPFACD VGGCGRHFSV VSNLRRHRKV HKGDGKDHGS 360 PDDSGDEM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MALAVDNRQQ QQQFSSASYD NMRYPQPQFT NPWVSAPPTG HSHMYATAAS SASDPSRYAA  60
HAPNVSAAYS STQLPAPSLA SGILPLDPDL FDQTNLQFAQ DMSAPRPYGS AYNPSSATSS  120
TASSYAPTSA PQFASYGYQA DRRPSHPSVA FSYLDDQLEN LSVDMSDRFN TTSEAERQGY  180
NDALDASRGM VQMSQTDITP RNIYGGNAMR NPTDSYGFPT AHSSHSSISS ASTYPTYYNS  240
SVSEASVGDY SSANESIDVP NSRTLPRPSG LIAGSLPPAP QSMMGQFSSK VSSSSQKKHK  300
CKICDKRFTR PSSLQTHIYS HTGEKPFACD VGGCGRHFSV VSNLRRHRKV HKGDGKDHGS  360
PDDSGDEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	6e-08	C2H2 family protein