PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023910697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32394.9 Da PI: 8.807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l++++k +G g W+ +++ g++R++k+c++rw +yl XP_023910697.1 13 RGAWSAWEDKILINYIKIHGEGKWTDLPQRAGLRRCGKSCRLRWMNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG+ W+ Iar+++ gRt++++k++w++ XP_023910697.1 66 RGNFSEDEEDLIIKLHKLLGNS-WSIIARRLP-GRTDNEIKNYWNTI 110 89******************99.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence |
MGRRPCCAKG VIRGAWSAWE DKILINYIKI HGEGKWTDLP QRAGLRRCGK SCRLRWMNYL 60 RPDIKRGNFS EDEEDLIIKL HKLLGNSWSI IARRLPGRTD NEIKNYWNTI LSKRVQGDKT 120 HEQSSRILKS IGRIGKLTSD SNHGIKPVAH PVIRPKVMRC TKVILPWQPD NNNQMFNENI 180 VSYGNSKNLF PSVQPENNIS DFLIDLDINH LLRSDVTNSD GHQTNVQDNV LDLPVSGCDA 240 KLKDLMDEGK PENWRATNPF QPNEAMDLNT LASFLDLEDT WIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-56 | MYB family protein |