PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910544.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 296aa MW: 32656.8 Da PI: 8.2173

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + XP_023910544.1 12 KGPWSPEEDEALQRLVQSYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	54.4	3e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed+ +++a++++G++ W+tIar ++ gRt++ +k++w++ XP_023910544.1 66 PFTPDEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MASTKKDLDR IKGPWSPEED EALQRLVQSY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFTPD EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMGDDF 120 NDDVSNPQPL KRSASVGAAT VTGTGLYLNP SSPSGSDLSD SSMPATSPSH VFRPVARAVS 180 LVPAHPVETS CSTTTDPTTS LSLSLPGSDP FELISPAQMV PPLPPQQQQQ PPPPEQPVTG 240 YEKQFFSNEF LAVMQEMIRK EVRNYMSGIE QNGFCNLQTD AIRNAVIKRI GISKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-78	MYB family protein