PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909223.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HB-PHD

Protein Properties

Length: 704aa MW: 79330.7 Da PI: 9.1023

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.2	3.6e-10	534	578	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n p ++ +e+L+k+l+L+ ++V+ WF+N R+ XP_023909223.1 534 RNAVEKLRQVFAENELPPRAVKEDLSKELSLDPEKVSKWFKNARY 578 567899*************************************97 PP
2	PHD	35.2	2.8e-12	267	322	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l+++++p g w+C+ C++k XP_023909223.1 267 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTDNIPPGdqGWFCKFCECK 322 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MNVSFIALQV VDLFQQPYSS FSAHTSKLDM HGTAKKLTFQ ESSRSCYSKT ESGSKLIASF 60 KFKKGSKISD GKKHKPKSKS HVNTVGSNLS KRTVTESVSR GPKNDSISRK FVSKKILHKA 120 LDTKSSKKQS SLKLQGGKPS LNSSERNGKN ADGEVKITNL KKRKKRMQKD TVELDEASRL 180 KRRTRYLLIK MKLEQNLIDA YSGEGWKGQS REKIKPEKEL QRAKKQILKC KLGIRDAIRQ 240 LDSLSSEGCI EDSVIAPDGS VYHEHIFCAK CKLREAFPDN DIILCDGTCN CAFHQKCLDP 300 PLDTDNIPPG DQGWFCKFCE CKMEILEAMN AHLGTHFSMN SIWQDIFKEE AAFPDGGNPL 360 LDPAEEWPSD DSDDDDYNPE RRENSCTISG AEADENASDD TSSSTSLSWS LDGEVFPGKE 420 SMSCENHFAN TSLDSDESTE GEIICGPRQR RTVDYKKLYD EMFGKDAPPY EQASEDEDWG 480 PAKRKRREKE SDAASTLMTL YESEKKCSNS DTREVKKKHP LETSTRRAFF RIPRNAVEKL 540 RQVFAENELP PRAVKEDLSK ELSLDPEKVS KWFKNARYLA LKSRKGEIGT QLQSFKESRL 600 ENVEKSATNV EASEGTSAEI MVHMPKNVKT QRKRLKSLTG TLKKKQHMRS SLGSPSNGNK 660 DIVEFSDDVS LKKLLKARTK ERKRINVMAG GGGCQVAEME MERL

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MNVSFIALQV VDLFQQPYSS FSAHTSKLDM HGTAKKLTFQ ESSRSCYSKT ESGSKLIASF  60
KFKKGSKISD GKKHKPKSKS HVNTVGSNLS KRTVTESVSR GPKNDSISRK FVSKKILHKA  120
LDTKSSKKQS SLKLQGGKPS LNSSERNGKN ADGEVKITNL KKRKKRMQKD TVELDEASRL  180
KRRTRYLLIK MKLEQNLIDA YSGEGWKGQS REKIKPEKEL QRAKKQILKC KLGIRDAIRQ  240
LDSLSSEGCI EDSVIAPDGS VYHEHIFCAK CKLREAFPDN DIILCDGTCN CAFHQKCLDP  300
PLDTDNIPPG DQGWFCKFCE CKMEILEAMN AHLGTHFSMN SIWQDIFKEE AAFPDGGNPL  360
LDPAEEWPSD DSDDDDYNPE RRENSCTISG AEADENASDD TSSSTSLSWS LDGEVFPGKE  420
SMSCENHFAN TSLDSDESTE GEIICGPRQR RTVDYKKLYD EMFGKDAPPY EQASEDEDWG  480
PAKRKRREKE SDAASTLMTL YESEKKCSNS DTREVKKKHP LETSTRRAFF RIPRNAVEKL  540
RQVFAENELP PRAVKEDLSK ELSLDPEKVS KWFKNARYLA LKSRKGEIGT QLQSFKESRL  600
ENVEKSATNV EASEGTSAEI MVHMPKNVKT QRKRLKSLTG TLKKKQHMRS SLGSPSNGNK  660
DIVEFSDDVS LKKLLKARTK ERKRINVMAG GGGCQVAEME MERL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	165	KKRKK
2	162	192	KRKKRMQKDTVELDEASRLKRRTRYLLIKMK
3	163	193	KRKKRMQKDTVELDEASRLKRRTRYLLIKMK
4	484	489	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-167	HB-PHD family protein