PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023909093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 199aa MW: 21622.1 Da PI: 8.5717 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.6e-06 | 7 | 32 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023909093.1 7 YKGRHCKKFYTEEGCPYGDNCTFLHD 32 78888********************7 PP | |||||||
2 | zf-CCCH | 43.4 | 5.8e-14 | 68 | 93 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023909093.1 68 WKTRICNKWELTGYCPFGSKCHFAHG 93 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
GDSQRSYKGR HCKKFYTEEG CPYGDNCTFL HDEQSKNRES VAISLGPGGY GGAAASPVSG 60 PNAKPSNWKT RICNKWELTG YCPFGSKCHF AHGAAGLREA YTIIRGELHR YGGGLVEGET 120 RDSSSAPPDS KQGGVPSKTL ADSVVVSVAP VPHSDVYHMG VPSQRSSIVI QRPGQRTHQK 180 WKGPDKISRI YGDWIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-68 | C3H family protein |