PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023907878.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 366aa    MW: 40872.5 Da    PI: 5.3574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023907878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-0892116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ff + G+C  G +CkF+H+
  XP_023907878.1  92 PKTVLCQFFKK-GHCDKGRKCKFSHD 116
                     79*********.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MPPKKDNAPK KAKATVEDKT FGMKNKKGGA AKKQIQQIKA ATASAKTPDE KKKEAEKLAR  60
EKEKAASEAA AKEAAELFKP VNTQKVPFGV DPKTVLCQFF KKGHCDKGRK CKFSHDLDAE  120
RKTQKKSLYT DTREGEGDEA DEKKKDDMQD WDEEKLRSVV LSKHGNPKTT TDKVCKFFIE  180
AVENQKYGWF WTCPNGNDKC MYKHSLPPGF VLKTKEQRAA EKALMDKSPL ATLTLEDFLE  240
SERHKLTGTL TPVTPDSFAK WKKERLDKKA AEAEAQQMKE ATGRAMFEKG DWQASESEGE  300
DDDDDGNDDG TWNLEALRRE TEAARQKKEE ERLGLAAGAL DGQTLNGDGA DDASPEDNED  360
DDDGND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.12e-55C3H family protein