PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907401.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 340aa MW: 38405.9 Da PI: 6.9585

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	179	198	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023907401.1 179 FSCPLCFKTFNRYNNMQMHM 198 89*****************9 PP
2	zf-C2H2	14.6	9.5e-05	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_023907401.1 263 FMCRKCGKAFAVRGDWRTHEKNC 285 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MTDPYSNHFS GWFNLNSLYH YSSSTSSTPS FYSPYDYCSN NNINVNTTNS FTYFEPSPPS 60 PPLREALPLL SLSPTRNEEQ ESSPSYMEVD KNKVDKDKEE LLFSSTSAAS NDDDPAVTVA 120 LHLGLPSPSS ADLISTLSST EILDKDEVTV ASGYLPDRLN KGQYWIPTPA QILIGPTQFS 180 CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAP GCRNNIDHPR 240 SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CTCGSDFKHK 300 RSLKDHIKAF GHGHAAFGID CFEEEDEAAS EIEQDNESSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-129	C2H2 family protein