PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G51220.1
Common NameAtWIP5, F11M15.9, WIP5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 337aa    MW: 38238.3 Da    PI: 6.9637
Description WIP domain protein 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G51220.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05178197120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  AT1G51220.1 178 FTCPLCFKTFNRYNNMQMHM 197
                  89*****************9 PP
2zf-C2H213.70.00018262284123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C  Cgk F  k + ++H +++
  AT1G51220.1 262 FACRMCGKAFAVKGDWRTHEKNC 284
                  78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.39178200IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SMARTSM00355280224257IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.01E-7244282No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6248282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035551262282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP  60
LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL VTVDLHLGLP NYGVGESIRS  120
NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC  180
PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA  240
KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR  300
SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306949280.0
Expression AtlasAT1G51220-
AtGenExpressAT1G51220-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G51220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G51220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175533.10.0WIP domain protein 5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A178WMC80.0A0A178WMC8_ARATH; WIP5
STRINGAT1G51220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Sagasser M,Lu GH,Hahlbrock K,Weisshaar B
    A. thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins.
    Genes Dev., 2002. 16(1): p. 138-49
    [PMID:11782451]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Miao Y,Laun T,Zimmermann P,Zentgraf U
    Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.
    Plant Mol. Biol., 2004. 55(6): p. 853-67
    [PMID:15604721]
  5. Appelhagen I, et al.
    Weird fingers: functional analysis of WIP domain proteins.
    FEBS Lett., 2010. 584(14): p. 3116-22
    [PMID:20541552]
  6. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]