PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023907206.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26958.8 Da    PI: 9.3147
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023907206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.2e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+s rqvtfskRr+g++KKA+EL +LCdaev ++ifsst klye++s
  XP_023907206.1 10 RIDNSSSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEFAS 59
                    9***********************************************86 PP
2K-box80.54.1e-2777171599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ ++ +++ + +q+e+a Lk+++e L++++R l+Ge+L  L +k+Lq+Le++Le sl+ iR kK+++l+++i+el ++ + +++en +L kk++
  XP_023907206.1  77 QQPQNPASEVKFWQREAAILKQQLEDLRENHRYLMGEQLYGLGVKDLQNLENRLEMSLQGIRMKKEQILTDEIQELSRRGNLIHQENVELYKKVN 171
                     5556778999*********************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIAIQR IDNSSSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TAKLYEFAST  60
NMNAVLGRYN KSKGEYQQPQ NPASEVKFWQ REAAILKQQL EDLRENHRYL MGEQLYGLGV  120
KDLQNLENRL EMSLQGIRMK KEQILTDEIQ ELSRRGNLIH QENVELYKKV NNIREENLEL  180
CKKVRCTRHV NAESISPFIP FGTNFGEDLH VPIHLQLSQP DRQLYETPAR ETD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-100MIKC_MADS family protein