PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905880.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 440aa MW: 49145.6 Da PI: 7.4165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl XP_023905880.1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.8	2.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_023905880.1 67 RGAFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPNTHKPLS EVENEKDMLP TTNKSNEKTS IGSNKQNLIE TKNPKPPPMA TERYTLDASS 180 SSKFENSSGS NNSLTTTPAT QEFFLDRFGG SGTSHETSST SCRPSDLVGY FSFQHLNYGP 240 DIRLSVHPNT SLCFNPNSRS SEMISDYNSS MTSSMLHSMS SSIVKPSVSL PSDKNPSLGS 300 GDVNGIHNWE SSTFSNNCSN SNGSSSSMEL QSSSNFFENH AFSWGLTDHV KSDKDHAHPL 360 EGDTEDIKWS EYLHTPFLMG TALQNQISQP MCSEIKPETS FMTDGSSTSW HHNQYQQALP 420 ASDIYTKDLQ RLAVAFGQTL

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPNTHKPLS EVENEKDMLP TTNKSNEKTS IGSNKQNLIE TKNPKPPPMA TERYTLDASS  180
SSKFENSSGS NNSLTTTPAT QEFFLDRFGG SGTSHETSST SCRPSDLVGY FSFQHLNYGP  240
DIRLSVHPNT SLCFNPNSRS SEMISDYNSS MTSSMLHSMS SSIVKPSVSL PSDKNPSLGS  300
GDVNGIHNWE SSTFSNNCSN SNGSSSSMEL QSSSNFFENH AFSWGLTDHV KSDKDHAHPL  360
EGDTEDIKWS EYLHTPFLMG TALQNQISQP MCSEIKPETS FMTDGSSTSW HHNQYQQALP  420
ASDIYTKDLQ RLAVAFGQTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-107	MYB family protein