PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905851.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 290aa MW: 32727.5 Da PI: 5.4878

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C+l+ yfp eqpk f+n+hklFG+sn+lk+lk+l++ ++ +am+s++y+A++r + PvyG+ g+i +lq q+ q+++el+ XP_023905851.1 10 ACAACKYQRRKCSSECPLSLYFPPEQPKMFQNAHKLFGVSNILKILKNLQPCQKAEAMRSIIYQANIRDKFPVYGCWGIICQLQYQILQAEEELH 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_023905851.1 105 AVHAQL 110 *99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MTLKGGTSQA CAACKYQRRK CSSECPLSLY FPPEQPKMFQ NAHKLFGVSN ILKILKNLQP 60 CQKAEAMRSI IYQANIRDKF PVYGCWGIIC QLQYQILQAE EELHAVHAQL EMSRQHQHQI 120 SSLSDDMVAS QLELGMAPPS TNALSLFNHT PQPYNAVDAL PVTQQQHSYW NCNRAAYNSG 180 YMDTKDNVGN PFWVQHSYAN NDNNSNNSLA IQSELVSSQP LAIQHEVVHD YDEIHPFFDT 240 IDDRQSYIDS KEPYESSSEE SLKDTTQSVE HVAENELKSA AACFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-59	LBD family protein