PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904795.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 843aa MW: 100047 Da PI: 6.6248

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	232	251	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_023904795.1 232 CPFHLKTGACRFGQRCSRVH 251 ******************99 PP
2	zf-CCCH	24.6	4.3e-08	361	388	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023904795.1 361 WKVAICGEYMKSRfkTCSHGTACNFIHC 388 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence
MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE 60 EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK 120 KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI 180 DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA 240 CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE HTDEEVEGCY EEFYEDVHTE 300 FLKFGEIVNF KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR 360 WKVAICGEYM KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS 420 DEVGYQKEVE QENLGQLRHS RKRLTDVDRY YSRSKSKEID YLNGGGSSRR NDNKNDMQKS 480 TQRRGRTSND RKQMEVLDED MRGEKTNFKG GSYRKSRSHD TDSEGEWSDR YKDRYYGSAR 540 KSSRLRNRDV NHRTHEVESE GGYSDRSEDR ETHDGHARKS SRHSRNAKFV DDCEDQEKFG 600 GNWSDRDGDQ ETHDAYMTKS SRHRRKVGHP DDRMDSKNRT HDTDGEWSDG ERDRDRHHRK 660 RSESSRHLRK VGHSDDHKDS KNRSHDPEGE WSDRDTNRDR HHHKKRKSSR RDHDHGGSKN 720 RADDTNLISD WLDSDGERHK SQTRKHTRHR NEALDYSDDE GEPAKKLKDK FHSRESSIEK 780 SGLERGSMHS HSRWDSINEN LESDGSRESN SSDQYVQRHK LHDLESSYNS DKYIDKQDRW 840 EPD

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence

MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE  60
EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK  120
KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI  180
DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA  240
CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE HTDEEVEGCY EEFYEDVHTE  300
FLKFGEIVNF KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR  360
WKVAICGEYM KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS  420
DEVGYQKEVE QENLGQLRHS RKRLTDVDRY YSRSKSKEID YLNGGGSSRR NDNKNDMQKS  480
TQRRGRTSND RKQMEVLDED MRGEKTNFKG GSYRKSRSHD TDSEGEWSDR YKDRYYGSAR  540
KSSRLRNRDV NHRTHEVESE GGYSDRSEDR ETHDGHARKS SRHSRNAKFV DDCEDQEKFG  600
GNWSDRDGDQ ETHDAYMTKS SRHRRKVGHP DDRMDSKNRT HDTDGEWSDG ERDRDRHHRK  660
RSESSRHLRK VGHSDDHKDS KNRSHDPEGE WSDRDTNRDR HHHKKRKSSR RDHDHGGSKN  720
RADDTNLISD WLDSDGERHK SQTRKHTRHR NEALDYSDDE GEPAKKLKDK FHSRESSIEK  780
SGLERGSMHS HSRWDSINEN LESDGSRESN SSDQYVQRHK LHDLESSYNS DKYIDKQDRW  840
EPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	RRKEKRK
2	33	47	RRKEKRKAKKKMKRK
3	34	42	RKEKRKAKK
4	38	46	RKEKRKAKK
5	41	48	KKKMKRKQ
6	105	121	RKKKEEEEEEEEERRKK
7	106	122	RKKKEEEEEEEEERRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-152	C3H family protein