PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904789.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 850aa MW: 100764 Da PI: 6.6428

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	232	251	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_023904789.1 232 CPFHLKTGACRFGQRCSRVH 251 ******************99 PP
2	zf-CCCH	24.6	4.4e-08	361	388	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023904789.1 361 WKVAICGEYMKSRfkTCSHGTACNFIHC 388 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE 60 EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK 120 KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI 180 DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA 240 CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE HTDEEVEGCY EEFYEDVHTE 300 FLKFGEIVNF KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR 360 WKVAICGEYM KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS 420 DEVGYQKEVE QENLGQLRHS RKRLTDVDSS SNFHGRYYSR SKSKEIDYLN GGGSSRRNDN 480 KNDMQKSTQR RGRTSNDRKQ MEVLDEDMRG EKTNFKGGSY RKSRSHDTDS EGEWSDRYKD 540 RYYGSARKSS RLRNRDVNHR THEVESEGGY SDRSEDRETH DGHARKSSRH SRNAKFVDDC 600 EDQEKFGGNW SDRDGDQETH DAYMTKSSRH RRKVGHPDDR MDSKNRTHDT DGEWSDGERD 660 RDRHHRKRSE SSRHLRKVGH SDDHKDSKNR SHDPEGEWSD RDTNRDRHHH KKRKSSRRDH 720 DHGGSKNRAD DTNLISDWLD SDGERHKSQT RKHTRHRNEA LDYSDDEGEP AKKLKDKFHS 780 RESSIEKSGL ERGSMHSHSR WDSINENLES DGSRESNSSD QYVQRHKLHD LESSYNSDKY 840 IDKQDRWEPD

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE  60
EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK  120
KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI  180
DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA  240
CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE HTDEEVEGCY EEFYEDVHTE  300
FLKFGEIVNF KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR  360
WKVAICGEYM KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS  420
DEVGYQKEVE QENLGQLRHS RKRLTDVDSS SNFHGRYYSR SKSKEIDYLN GGGSSRRNDN  480
KNDMQKSTQR RGRTSNDRKQ MEVLDEDMRG EKTNFKGGSY RKSRSHDTDS EGEWSDRYKD  540
RYYGSARKSS RLRNRDVNHR THEVESEGGY SDRSEDRETH DGHARKSSRH SRNAKFVDDC  600
EDQEKFGGNW SDRDGDQETH DAYMTKSSRH RRKVGHPDDR MDSKNRTHDT DGEWSDGERD  660
RDRHHRKRSE SSRHLRKVGH SDDHKDSKNR SHDPEGEWSD RDTNRDRHHH KKRKSSRRDH  720
DHGGSKNRAD DTNLISDWLD SDGERHKSQT RKHTRHRNEA LDYSDDEGEP AKKLKDKFHS  780
RESSIEKSGL ERGSMHSHSR WDSINENLES DGSRESNSSD QYVQRHKLHD LESSYNSDKY  840
IDKQDRWEPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	RRKEKRK
2	33	47	RRKEKRKAKKKMKRK
3	34	42	RKEKRKAKK
4	38	46	RKEKRKAKK
5	41	48	KKKMKRKQ
6	105	121	RKKKEEEEEEEEERRKK
7	106	122	RKKKEEEEEEEEERRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-152	C3H family protein