PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904784.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 882aa MW: 104420 Da PI: 6.831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	232	251	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_023904784.1 232 CPFHLKTGACRFGQRCSRVH 251 ******************99 PP
2	zf-CCCH	24.5	4.6e-08	393	420	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023904784.1 393 WKVAICGEYMKSRfkTCSHGTACNFIHC 420 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE 60 EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK 120 KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI 180 DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA 240 CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE VCKRCLHVIL YWSSLLVMAI 300 TLRGLKMQAT ILHTDEEVEG CYEEFYEDVH TEFLKFGEIV NFKVCRNGAF HLRGNVYVQY 360 KSLDSAVLVY NSINGRYFAG KQISCEFVNV TRWKVAICGE YMKSRFKTCS HGTACNFIHC 420 FRNPGGDYEW ADFDKPPPRY WVRKMASLFG YSDEVGYQKE VEQENLGQLR HSRKRLTDVD 480 SSSNFHGRYY SRSKSKEIDY LNGGGSSRRN DNKNDMQKST QRRGRTSNDR KQMEVLDEDM 540 RGEKTNFKGG SYRKSRSHDT DSEGEWSDRY KDRYYGSARK SSRLRNRDVN HRTHEVESEG 600 GYSDRSEDRE THDGHARKSS RHSRNAKFVD DCEDQEKFGG NWSDRDGDQE THDAYMTKSS 660 RHRRKVGHPD DRMDSKNRTH DTDGEWSDGE RDRDRHHRKR SESSRHLRKV GHSDDHKDSK 720 NRSHDPEGEW SDRDTNRDRH HHKKRKSSRR DHDHGGSKNR ADDTNLISDW LDSDGERHKS 780 QTRKHTRHRN EALDYSDDEG EPAKKLKDKF HSRESSIEKS GLERGSMHSH SRWDSINENL 840 ESDGSRESNS SDQYVQRHKL HDLESSYNSD KYIDKQDRWE PD

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE  60
EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK  120
KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI  180
DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA  240
CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE VCKRCLHVIL YWSSLLVMAI  300
TLRGLKMQAT ILHTDEEVEG CYEEFYEDVH TEFLKFGEIV NFKVCRNGAF HLRGNVYVQY  360
KSLDSAVLVY NSINGRYFAG KQISCEFVNV TRWKVAICGE YMKSRFKTCS HGTACNFIHC  420
FRNPGGDYEW ADFDKPPPRY WVRKMASLFG YSDEVGYQKE VEQENLGQLR HSRKRLTDVD  480
SSSNFHGRYY SRSKSKEIDY LNGGGSSRRN DNKNDMQKST QRRGRTSNDR KQMEVLDEDM  540
RGEKTNFKGG SYRKSRSHDT DSEGEWSDRY KDRYYGSARK SSRLRNRDVN HRTHEVESEG  600
GYSDRSEDRE THDGHARKSS RHSRNAKFVD DCEDQEKFGG NWSDRDGDQE THDAYMTKSS  660
RHRRKVGHPD DRMDSKNRTH DTDGEWSDGE RDRDRHHRKR SESSRHLRKV GHSDDHKDSK  720
NRSHDPEGEW SDRDTNRDRH HHKKRKSSRR DHDHGGSKNR ADDTNLISDW LDSDGERHKS  780
QTRKHTRHRN EALDYSDDEG EPAKKLKDKF HSRESSIEKS GLERGSMHSH SRWDSINENL  840
ESDGSRESNS SDQYVQRHKL HDLESSYNSD KYIDKQDRWE PD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	RRKEKRK
2	33	47	RRKEKRKAKKKMKRK
3	34	42	RKEKRKAKK
4	38	46	RKEKRKAKK
5	41	48	KKKMKRKQ
6	105	121	RKKKEEEEEEEEERRKK
7	106	122	RKKKEEEEEEEEERRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-144	C3H family protein