PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023904772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 900aa MW: 106667 Da PI: 7.0963 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.2e-06 | 232 | 251 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_023904772.1 232 CPFHLKTGACRFGQRCSRVH 251 ******************99 PP | |||||||
2 | zf-CCCH | 24.5 | 4.7e-08 | 411 | 438 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023904772.1 411 WKVAICGEYMKSRfkTCSHGTACNFIHC 438 899************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence |
MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE 60 EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK 120 KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI 180 DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA 240 CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE VCKRCLHVIL YWSSLLVMAI 300 TLRGLKMQAT ILVCGYIWHF LVLKMKRRKS HTDEEVEGCY EEFYEDVHTE FLKFGEIVNF 360 KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR WKVAICGEYM 420 KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS DEVGYQKEVE 480 QENLGQLRHS RKRLTDVDSS SNFHGRYYSR SKSKEIDYLN GGGSSRRNDN KNDMQKSTQR 540 RGRTSNDRKQ MEVLDEDMRG EKTNFKGGSY RKSRSHDTDS EGEWSDRYKD RYYGSARKSS 600 RLRNRDVNHR THEVESEGGY SDRSEDRETH DGHARKSSRH SRNAKFVDDC EDQEKFGGNW 660 SDRDGDQETH DAYMTKSSRH RRKVGHPDDR MDSKNRTHDT DGEWSDGERD RDRHHRKRSE 720 SSRHLRKVGH SDDHKDSKNR SHDPEGEWSD RDTNRDRHHH KKRKSSRRDH DHGGSKNRAD 780 DTNLISDWLD SDGERHKSQT RKHTRHRNEA LDYSDDEGEP AKKLKDKFHS RESSIEKSGL 840 ERGSMHSHSR WDSINENLES DGSRESNSSD QYVQRHKLHD LESSYNSDKY IDKQDRWEPD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | RRKEKRK |
2 | 33 | 47 | RRKEKRKAKKKMKRK |
3 | 34 | 42 | RKEKRKAKK |
4 | 38 | 46 | RKEKRKAKK |
5 | 41 | 48 | KKKMKRKQ |
6 | 105 | 121 | RKKKEEEEEEEEERRKK |
7 | 106 | 122 | RKKKEEEEEEEEERRKK |
8 | 326 | 331 | KRRKSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-141 | C3H family protein |