PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904347.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26524.1 Da    PI: 8.9714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-19129183256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_023904347.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 183
                     788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-40129218191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_023904347.1 129 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 218
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDFNDVCNTG LVLGLGLTAS AQESSSPSKA PKNKACSNFT PTGFEPSLTL GLSGESYHQV  60
IPRKIIDVKK GYEESIDLYR QASPPHSAVS SFSSGRVKRE RDLSSEEVEA VDRVSSRISD  120
EDEDGPNARK KLRLTKEQSA LLEESFKQHS TLNPKQKQAL ARQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CEFLKKCCET LTDENRRLQK ELQELKALKL AQPLYMHMPA ATLTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-77HD-ZIP family protein