PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903820.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 395aa MW: 44939.1 Da PI: 9.3684

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.7e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++m+ ++R +k+c +rw +yl XP_023903820.1 4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMPqpLHRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.2	2.8e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_023903820.1 59 KGSLTPEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MKERQRWQPE EDALLRAYVK QYGPKEWNLI SQRMPQPLHR DPKSCLERWK NYLKPGLKKG 60 SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ QQKQNHLHRN 120 NLNTNHHNCS EYSHSDCTDT IPAVVVGSTS SSEKVGHGPY DHILDTFAEK YVLPQPKNMA 180 PVLPGISLSD PDRVLSLGSN TPTTTTIATT SSSSVSVIPL WMNMNMNMNM NVSTTSSSAT 240 SSTTPSPSVS LSLSPSDPGL DPDINPTRVY MGQQMGTLVQ YVKEVEEGRQ SWVQHRKEAS 300 WRLSRLEQQL ESEKARKRRE KMEEIEAKIR CLREEELAFL GRIESEYKEE LNALHRDAET 360 KEAKLVESWC SKHVKLAKLV DLIGLGHTSH GFTVL

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MKERQRWQPE EDALLRAYVK QYGPKEWNLI SQRMPQPLHR DPKSCLERWK NYLKPGLKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ QQKQNHLHRN  120
NLNTNHHNCS EYSHSDCTDT IPAVVVGSTS SSEKVGHGPY DHILDTFAEK YVLPQPKNMA  180
PVLPGISLSD PDRVLSLGSN TPTTTTIATT SSSSVSVIPL WMNMNMNMNM NVSTTSSSAT  240
SSTTPSPSVS LSLSPSDPGL DPDINPTRVY MGQQMGTLVQ YVKEVEEGRQ SWVQHRKEAS  300
WRLSRLEQQL ESEKARKRRE KMEEIEAKIR CLREEELAFL GRIESEYKEE LNALHRDAET  360
KEAKLVESWC SKHVKLAKLV DLIGLGHTSH GFTVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	321	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	2e-57	MYB family protein