PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903423.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 695aa MW: 77982.1 Da PI: 10.4049

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	10	44	2	37
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++W t Ed+ll++av ++G+ +W+++a +++ +R+ XP_023903423.1 10 QPWGTLEDLLLACAVIRHGTASWDSVAMELQ-NRSS 44 79***************************.96 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MGREHGTSVQ PWGTLEDLLL ACAVIRHGTA SWDSVAMELQ NRSSSSSSSA ATAATATAML 60 GITPLYCKDK FDDLKRRFMA RNDDESGRIA EELRRIRVEE LKREVRRRDD SIVSLELKVK 120 RLKEERDRSL KEEAENVDLK KDLEGDAGET TPLPENLAVS GDISDDKENR SFNESNSTTQ 180 KGEGQARNDA VKVQIRPEPE INEPDPGRTV SNPVLNGKVD ANENEIQDDD DDAGEKRKLV 240 GGIMVKPSRS GRLSESNEGL ESVGESKREK ETGSKQSSDV QSSASLSRKK RRRKVSSSGG 300 GSSSGEEPEV DEVSPATKRV SAVKSEPLIK LLGIIRSHRL SSVFERRLRS QESERYKNLI 360 RQHMDLQTVQ SRLDRGLYVD NIHKFFRDLL LIFNNGVMFF RKSSPEYVVA QELRALVRKE 420 MRNKLRKPQP RKTVKLEPKH EPDSLSKPNN KPSTATLVAC GKRSSMKVLT EGAHRKENKR 480 EKEAFGEKPN VVINQKKNEG TFIRVSGEEK QGIRRKRTRE RQGRRSRRTN NNKGGGEIKH 540 EYGGNVLSSH DALELIKIEK KKESTVKKKK QGAASFLKRM KQNSPSDQVT EDTDDVSEDD 600 SIESKGEKEE EEEEEEEKKR RGRKNEGRGE RVTRSSTGGR GTKEENAKGK RGVGRPPKRP 660 ETVTVAAASG KRGRDNSESE VVGSAGSRSR KRPRR

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MGREHGTSVQ PWGTLEDLLL ACAVIRHGTA SWDSVAMELQ NRSSSSSSSA ATAATATAML  60
GITPLYCKDK FDDLKRRFMA RNDDESGRIA EELRRIRVEE LKREVRRRDD SIVSLELKVK  120
RLKEERDRSL KEEAENVDLK KDLEGDAGET TPLPENLAVS GDISDDKENR SFNESNSTTQ  180
KGEGQARNDA VKVQIRPEPE INEPDPGRTV SNPVLNGKVD ANENEIQDDD DDAGEKRKLV  240
GGIMVKPSRS GRLSESNEGL ESVGESKREK ETGSKQSSDV QSSASLSRKK RRRKVSSSGG  300
GSSSGEEPEV DEVSPATKRV SAVKSEPLIK LLGIIRSHRL SSVFERRLRS QESERYKNLI  360
RQHMDLQTVQ SRLDRGLYVD NIHKFFRDLL LIFNNGVMFF RKSSPEYVVA QELRALVRKE  420
MRNKLRKPQP RKTVKLEPKH EPDSLSKPNN KPSTATLVAC GKRSSMKVLT EGAHRKENKR  480
EKEAFGEKPN VVINQKKNEG TFIRVSGEEK QGIRRKRTRE RQGRRSRRTN NNKGGGEIKH  540
EYGGNVLSSH DALELIKIEK KKESTVKKKK QGAASFLKRM KQNSPSDQVT EDTDDVSEDD  600
SIESKGEKEE EEEEEEEKKR RGRKNEGRGE RVTRSSTGGR GTKEENAKGK RGVGRPPKRP  660
ETVTVAAASG KRGRDNSESE VVGSAGSRSR KRPRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	294	RKKRRRK
2	289	294	KKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-42	MYB_related family protein