PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023901997.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 266aa    MW: 29465.3 Da    PI: 8.4318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023901997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07167186626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C f+ + GtC yGd+C++ H+
  XP_023901997.1 167 CEFWVQ-GTCVYGDQCPYLHS 186
                     ******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MEIKTARRGP PQGKESSVFD RLGAGRGGHL NNSSNKICKF WLSGRCLKNP CRFAHSETPD  60
VATIHRSRQT PYYPHSSNAL VSNTWRRGPR NSQNVQEKVV NHKSSKNVPG KSESDLEDIK  120
KKLPELAESV SEGSSECSVV ENDSNLENVV EEKPLEHVPK KTTEMVCEFW VQGTCVYGDQ  180
CPYLHSWFRG DKFKRLAELQ GHNKAVNGIA LPLRCNKLCS GSSDGTIRLW DCHTGQCANV  240
INLGGEVGSV CSEGPWLFVG MPNVVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.13e-41C3H family protein