PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023901996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24189.6 Da PI: 6.3046 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.7 | 9.9e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskR+ g++KKA+ELS+LCdae+ +++fs tgkl+e++s XP_023901996.1 9 KKIDNMTARQVTFSKRKRGLFKKAFELSTLCDAEIGLMVFSATGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 43.1 | 1.8e-15 | 93 | 170 | 20 | 97 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +a L keie+ +e+ ++ Ge+L ++++eLq+Le++Le +l+++ ++K e +le+i lq+k +l+een++L+++ XP_023901996.1 93 SYAMLSKEIEEKTHELSKIRGEELPGMDIEELQKLEKELEVALSRVIETKGERFLEEITALQQKGAQLREENQRLKQM 170 5788999999999**************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MTRRKIQIKK IDNMTARQVT FSKRKRGLFK KAFELSTLCD AEIGLMVFSA TGKLFEFASS 60 SMQQVIERHN LHPNNLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHELSK IRGEELPGMD 120 IEELQKLEKE LEVALSRVIE TKGERFLEEI TALQQKGAQL REENQRLKQM ENLFSTQTYV 180 LEQGQSSESI TNICSSSDPQ NNDSSKISLK LG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-68 | MIKC_MADS family protein |