PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901847.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 555aa MW: 61137.9 Da PI: 4.9969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	511	533	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ sF++k +L++Hi+ H XP_023901847.1 511 HTCATCNASFPSKTQLHQHIKDH 533 79******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MGASQSTAQG TTAAASAEVK TSYYELLGLQ RQATEEEIKK AYRRKALELH PDRNFGDEAT 60 ATAVFAEVQA AYEVLSDPQE RAWYDSHEAA ILRGADDVGG DDGVPTYENV RATTADDLAR 120 MVRKFNSNVA FTDAPAGFFG FLRDAFAGLA REEVIAASWD GLEPPLDYPS FGHQADAYDD 180 GVKRFYAAWA GFSTVKSFAW KDRYRLSEAP DRWSRRRMEQ ENRKARQDGV REFNDAVRAL 240 VAFVRKRDPR YVPSTQTEAE RQQALRDAAA AQAARARAAN EAKWSQEVPE WTKVREPEEL 300 EESSEEEVEV QILECVACNK EFKSERQWEA HEKSKKHQKA LYALQKKMRK ENAHLDLADD 360 HSGSGAVTPV AEDSDESGSP DIVPLPAEEI QLEERETYDL AEADAHARGD ESNAEQTKEG 420 ASPQPDGPSV QDEHSTSESE EDDEYGSAEK VQARLQNVSI HHASQPADSD DNDESQPALA 480 QPKMGKAAQK RAKRAAAAAV ASSIQQSASS HTCATCNASF PSKTQLHQHI KDHGHAVLKT 540 VGTAGSAKGK KKGKR

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MGASQSTAQG TTAAASAEVK TSYYELLGLQ RQATEEEIKK AYRRKALELH PDRNFGDEAT  60
ATAVFAEVQA AYEVLSDPQE RAWYDSHEAA ILRGADDVGG DDGVPTYENV RATTADDLAR  120
MVRKFNSNVA FTDAPAGFFG FLRDAFAGLA REEVIAASWD GLEPPLDYPS FGHQADAYDD  180
GVKRFYAAWA GFSTVKSFAW KDRYRLSEAP DRWSRRRMEQ ENRKARQDGV REFNDAVRAL  240
VAFVRKRDPR YVPSTQTEAE RQQALRDAAA AQAARARAAN EAKWSQEVPE WTKVREPEEL  300
EESSEEEVEV QILECVACNK EFKSERQWEA HEKSKKHQKA LYALQKKMRK ENAHLDLADD  360
HSGSGAVTPV AEDSDESGSP DIVPLPAEEI QLEERETYDL AEADAHARGD ESNAEQTKEG  420
ASPQPDGPSV QDEHSTSESE EDDEYGSAEK VQARLQNVSI HHASQPADSD DNDESQPALA  480
QPKMGKAAQK RAKRAAAAAV ASSIQQSASS HTCATCNASF PSKTQLHQHI KDHGHAVLKT  540
VGTAGSAKGK KKGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	4e-47	C2H2 family protein