PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900833.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 25063.6 Da PI: 9.5113

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.8	3.8e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_023900833.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAIIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	83.8	3.8e-28	76	170	3	97
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++++ e+++++l++e+a + k+ie L+ ++R+llGe+L+++sl+eLqq+e+qLe+s+++iR++K ++++eqie+l++ke+ l en +L +k XP_023900833.1 76 AQTNNKSIEQNMQHLKHEAATMMKKIEHLEVSKRRLLGEGLGTCSLEELQQIEEQLERSVSSIRARKAQVFKEQIEQLKEKERVLAAENARLCEK 170 4566668999********************************************************************************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAIIIFSP RGKLYEFASF 60 SMQETIERYR RHTKDAQTNN KSIEQNMQHL KHEAATMMKK IEHLEVSKRR LLGEGLGTCS 120 LEELQQIEEQ LERSVSSIRA RKAQVFKEQI EQLKEKERVL AAENARLCEK CGIQPQQGSN 180 EPREIIPYEE SSPSSDVETE LFIGPPEGRT KRSRLQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	8e-88	MIKC_MADS family protein