PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023900703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 49084.3 Da PI: 8.4199 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.6e-11 | 66 | 92 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023900703.1 66 PGEPDCSYYIRTGLCRFGATCRFNHPP 92 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 113 | 137 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023900703.1 113 QPECQYYLKTGTCKFGATCKFHHPR 137 799********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.6e-12 | 159 | 183 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_023900703.1 159 EAECAYYLRTGQCKFGNTCKFHHPQ 183 689********************97 PP | |||||||
4 | zf-CCCH | 39.1 | 1.3e-12 | 317 | 343 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG CkyG+ C+F+H++ XP_023900703.1 317 PGQPECQFYMKTGDCKYGAVCRFHHPR 343 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6.1e-13 | 363 | 389 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023900703.1 363 PGEPLCIFYSRYGICKFGPSCKFDHPM 389 589**********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence |
MEFEAGIPMS RAAAAAAAAA AAAAAAAAAA VSVTEPPSLS PNPDAMWQMN LRSSETMESG 60 PYPERPGEPD CSYYIRTGLC RFGATCRFNH PPNRKLAIAT ARMKGEFPER IGQPECQYYL 120 KTGTCKFGAT CKFHHPRDKA GIAGRVALNI LGYPLRPNEA ECAYYLRTGQ CKFGNTCKFH 180 HPQPTNMMVS LNGSTVYPTV QSPTTGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLLLH 240 QGMVSVPGWN AYGGQLGSVS SSETQQQTVA NSQIYGTSRQ GESTSAGSQG TFSPFRSGSV 300 PVGFYALQRE NVFPERPGQP ECQFYMKTGD CKYGAVCRFH HPRERLIPAP DCVLSTIGLP 360 LRPGEPLCIF YSRYGICKFG PSCKFDHPMG IFAYNISASS SADAPVRRLL GSSSGTAALN 420 LSSEGLVDAG SAKPRRLSLS ESRQMPSGDD NIDTEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |