PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023900080.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 952aa    MW: 105213 Da    PI: 5.1076
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023900080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24152253199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD v+F   +++
  XP_023900080.1 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDAVLFI--RDE 242
                     99*********************999*****954444.4.38************************************************..557 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_023900080.1 243 KSHLMVGVRRA 253
                     8889*****97 PP
2Auxin_resp111.58.2e-37278361183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s F+++YnPra++seFv+++++++k++  +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023900080.1 278 AAHAAANRSSFTIFYNPRACPSEFVIPLSRFRKSVFgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 361
                     79********************************988*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    
MGCVEERVKA GGSGFMGGSG AHTTCLLEEM KLLKEMQDQS GARKTINSEL WHACAGPLVS  60
LPQLGSLVYY FPQGHSEQVA ASTKRTVTSQ IPNYPNLPSQ LMCQLQNVTL HADKDTDEIY  120
AQMSLQPVNT EKDIFPVPDF GLKPNKHPSE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP  180
LDYTMQPPTQ ELVVRDLHDN TWTFRHIYRG QPKRHLLTTG WSLFVGAKRL KAGDAVLFIR  240
DEKSHLMVGV RRANRQQTTL PSSVLSADSM HIGVLAAAAH AAANRSSFTI FYNPRACPSE  300
FVIPLSRFRK SVFGTQLSVG MRFGMMFETE ESGKRRYMGT IVGISDLDPL RWPGSKWRNL  360
QVEWDEPGCC DKQNRVSPWE VETPESLFIF PSLTSGLKRP FHSGFLETEW GNMVKRPLVR  420
VPDNGNGDLP YPMPNIYSEQ LIKMLLKPQH MNHPGNFYPT VQQESATKVD PLRDMKIMQQ  480
GTTNQKSHLI CSEGTPPIQP QSGLDQPDAM NLNSSSKAMP PGKFNSLAEC ENRTLAGINT  540
EKPIIEPEIS TDELSQLTST GECNEEKLVA CPVTQNLVNQ PTFINQNQEP LQSQTSSWPM  600
QPQLESLIYH PQQLDVPQSD CSNPNGFLPS LDPDEWKFYP SCQPLGGMYR SPGPLSMFGL  660
QDSSALFPEA VNPALPPMGQ EMWDHQLNNL RILSQADQLT SFSHQDSRNL SCISNSSGLR  720
DLSDESYNQS GIYSCANIDV NNGGSTAVDP SVSSTILDDL CTVKNAGFQN PSDCLVGNFS  780
SSQDVQSQIT SASLGDSQAF SRQELPDSSG GTSSSNVDFD EGSLLQNSSW QQVVPLVRTY  840
TKVQKKGFVG RSIDVTGFRN YDELCAAIEG MFGLEGLLND PRGSGWKLVY VDYENDVLLV  900
GDDPWEQFVR CVRCIKILSP SEVQKMSEEG MQLLNSAAMQ GTNGPMSEGG YA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein