PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023900074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | ARF | ||||||||
Protein Properties | Length: 954aa MW: 105372 Da PI: 5.1076 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD v+F +++ XP_023900074.1 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDAVLFI--RDE 242 99*********************999*****954444.4.38************************************************..557 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+v+r+ XP_023900074.1 243 KSHLMVGVRRA 253 8889*****97 PP | |||||||
2 | Auxin_resp | 111.5 | 8.3e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPra++seFv+++++++k++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ XP_023900074.1 278 AAHAAANRSSFTIFYNPRACPSEFVIPLSRFRKSVFgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 361 79********************************988*********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 954 aa Download sequence |
MGCVEERVKA GGSGFMGGSG AHTTCLLEEM KLLKEMQDQS GARKTINSEL WHACAGPLVS 60 LPQLGSLVYY FPQGHSEQVA ASTKRTVTSQ IPNYPNLPSQ LMCQLQNVTL HADKDTDEIY 120 AQMSLQPVNT EKDIFPVPDF GLKPNKHPSE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP 180 LDYTMQPPTQ ELVVRDLHDN TWTFRHIYRG QPKRHLLTTG WSLFVGAKRL KAGDAVLFIR 240 DEKSHLMVGV RRANRQQTTL PSSVLSADSM HIGVLAAAAH AAANRSSFTI FYNPRACPSE 300 FVIPLSRFRK SVFGTQLSVG MRFGMMFETE ESGKRRYMGT IVGISDLDPL RWPGSKWRNL 360 QVEWDEPGCC DKQNRVSPWE VETPESLFIF PSLTSGLKRP FHSGFLGTET EWGNMVKRPL 420 VRVPDNGNGD LPYPMPNIYS EQLIKMLLKP QHMNHPGNFY PTVQQESATK VDPLRDMKIM 480 QQGTTNQKSH LICSEGTPPI QPQSGLDQPD AMNLNSSSKA MPPGKFNSLA ECENRTLAGI 540 NTEKPIIEPE ISTDELSQLT STGECNEEKL VACPVTQNLV NQPTFINQNQ EPLQSQTSSW 600 PMQPQLESLI YHPQQLDVPQ SDCSNPNGFL PSLDPDEWKF YPSCQPLGGM YRSPGPLSMF 660 GLQDSSALFP EAVNPALPPM GQEMWDHQLN NLRILSQADQ LTSFSHQDSR NLSCISNSSG 720 LRDLSDESYN QSGIYSCANI DVNNGGSTAV DPSVSSTILD DLCTVKNAGF QNPSDCLVGN 780 FSSSQDVQSQ ITSASLGDSQ AFSRQELPDS SGGTSSSNVD FDEGSLLQNS SWQQVVPLVR 840 TYTKVQKKGF VGRSIDVTGF RNYDELCAAI EGMFGLEGLL NDPRGSGWKL VYVDYENDVL 900 LVGDDPWEQF VRCVRCIKIL SPSEVQKMSE EGMQLLNSAA MQGTNGPMSE GGYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |