PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899955.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 269aa MW: 30534.6 Da PI: 6.8893

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll+d++k +G g+W +I+++ g +R++k+c++rw++yl XP_023899955.1 14 RGAWTALEDQLLIDYIKIHGEGRWGKIPKETGIKRCGKSCRLRWLNYL 61 89****************************55**********97 PP
2	Myb_DNA-binding	51.7	2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_023899955.1 67 RGNITQDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGRSPCCEKN GLNRGAWTAL EDQLLIDYIK IHGEGRWGKI PKETGIKRCG KSCRLRWLNY 60 LKPDIKRGNI TQDEEDLILR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS TLRKKVQANH 120 SELPKIEKKS IKGKSNDATP SLKIEPRLTT TKPTRCTKDE EIDRNTLVEE PSIKGVMEKS 180 KEANSDYRDG LLPITCENDM SWNFIADLNP GQFSLTEFLH ADFTELSELN SMVVEDCNNG 240 CINGSSPSSS EEAPMFTDEM LKNWAGDSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	7e-61	MYB family protein