PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899806.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 755aa MW: 82150.9 Da PI: 6.4707

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.5	7.1e-25	169	270	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023899806.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGED 260 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++v+r+ XP_023899806.1 261 GELRLGVRRA 270 99***996 PP
2	Auxin_resp	109.6	3.2e-36	295	380	1	82
Auxin_resp 1 aahaastksvFevvYnP....rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s +s+F+++YnP r s+seF+++++k++k+ ++++svGmRfkm+fe ed++err++G ++g+sd+dpvrWp+SkWr+L XP_023899806.1 295 VVNAISLRSPFNIYYNPsvssRPSSSEFIIPLRKFLKSADHSFSVGMRFKMRFEAEDAAERRYTGFITGISDVDPVRWPGSKWRCL 380 6899***********33333468**********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MGLIDLNTTE EDETPSSGSS STTSSSFSVA GLNTSVGSGL NLVVGASASA PASAASAVCL 60 ELWHACAGPL ISLPRKGSVV VYFPQGQLEQ LPDFSLAPAY TDDVPPHVFC RVLDVKLHAE 120 EGTDEVYAQV SLVPESEQFE QKLQEGEVDV DGEEEDVEVA ANSSTPHMFC KTLTASDTST 180 HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWK FRHIYRGQPR RHLLTTGWSA 240 FVNKKKLVSG DAVLFLRGED GELRLGVRRA VQVKGGATFS ALCSQQMNQS SLMEVVNAIS 300 LRSPFNIYYN PSVSSRPSSS EFIIPLRKFL KSADHSFSVG MRFKMRFEAE DAAERRYTGF 360 ITGISDVDPV RWPGSKWRCL LVRWDDIETR HNRVSPWEIE PSGSLSSSSS LMASGPKRTR 420 IGLPSAKLEF PVPNGIGASD FGESSRFQKV LQGQEILGFT HYDGIDTQNH HPSETRRCFP 480 GSNGSVIAGM GDGVRNPVVN SDLSYKGTGF GESFQFRKVL QGQEIFPSSP YGRAPVTNKA 540 HDNGSLGIID GVQVLNSQKG WSAMMQGNNA HMRPSAPSMQ VSSPSSVLMF QQAINPVSNL 600 SSVYNFNNME EQRISNRNFL VSETIGGNLT PSSHSGHSFC KKDQGGMNSS GFEHNQLGIS 660 LPPFANRSTF GGSQDLVSSC KSSCRLFGFS LTEEKDVANT EDNPTPVSLS LNPGASYLPH 720 VGEQFHPKPL LMTQAIGSNC TKGTPQYCLK NYDMH

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MGLIDLNTTE EDETPSSGSS STTSSSFSVA GLNTSVGSGL NLVVGASASA PASAASAVCL  60
ELWHACAGPL ISLPRKGSVV VYFPQGQLEQ LPDFSLAPAY TDDVPPHVFC RVLDVKLHAE  120
EGTDEVYAQV SLVPESEQFE QKLQEGEVDV DGEEEDVEVA ANSSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWK FRHIYRGQPR RHLLTTGWSA  240
FVNKKKLVSG DAVLFLRGED GELRLGVRRA VQVKGGATFS ALCSQQMNQS SLMEVVNAIS  300
LRSPFNIYYN PSVSSRPSSS EFIIPLRKFL KSADHSFSVG MRFKMRFEAE DAAERRYTGF  360
ITGISDVDPV RWPGSKWRCL LVRWDDIETR HNRVSPWEIE PSGSLSSSSS LMASGPKRTR  420
IGLPSAKLEF PVPNGIGASD FGESSRFQKV LQGQEILGFT HYDGIDTQNH HPSETRRCFP  480
GSNGSVIAGM GDGVRNPVVN SDLSYKGTGF GESFQFRKVL QGQEIFPSSP YGRAPVTNKA  540
HDNGSLGIID GVQVLNSQKG WSAMMQGNNA HMRPSAPSMQ VSSPSSVLMF QQAINPVSNL  600
SSVYNFNNME EQRISNRNFL VSETIGGNLT PSSHSGHSFC KKDQGGMNSS GFEHNQLGIS  660
LPPFANRSTF GGSQDLVSSC KSSCRLFGFS LTEEKDVANT EDNPTPVSLS LNPGASYLPH  720
VGEQFHPKPL LMTQAIGSNC TKGTPQYCLK NYDMH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein