PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898878.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family YABBY
Protein Properties Length: 210aa    MW: 23214.6 Da    PI: 7.5317
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY243.54.2e-75111782170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesas 93 
                     d+ s seq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++++  +   l e+ ++   n+  n+ + ++++
  XP_023898878.1  11 DHLSPSEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLFPSANQLHLGHAFFSTpqnLPEDIRSPPPNMMINQPNPSESM 105
                     78899*******************************************99999999999999999876533455666666666555554444444 PP

           YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       v++      + ee+p++p v rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_023898878.1 106 MPVRV----GADLEEIPKPPVVARPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 178
                     43333....66899****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSASSTAFSP DHLSPSEQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNMR  60
GLLFPSANQL HLGHAFFSTP QNLPEDIRSP PPNMMINQPN PSESMMPVRV GADLEEIPKP  120
PVVARPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLLP  180
DQPVKRTNES EDMLVKDGFC APANVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-89YABBY family protein